Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived trophoblast cells
NA
NA

Attributes by original data submitter

Sample

source_name
trophoblast progenitors at day 3_GATA2 ChIP
cell line
H9
source cell type
Human embryonic stem cells (hESC)
treated with
BMP4 for 3 day
cell type
trophoblast progenitors at day 3
chip antibody
anti-GATA2 (H116, sc-9008, Santa Cruz)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
24433316
Reads aligned (%)
84.3
Duplicates removed (%)
11.4
Number of peaks
4879 (qval < 1E-05)

hg38

Number of total reads
24433316
Reads aligned (%)
86.2
Duplicates removed (%)
10.1
Number of peaks
4975 (qval < 1E-05)

Base call quality data from DBCLS SRA