Antigen

Antigen Class

TFs and others

Antigen

SMC3

Cell type

Cell type Class

Uterus

Cell type

HeLa

Primary Tissue

Cervix

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

SMC3 (ESCO2 WT; ESCO1 siRNA)

cell line

HeLa

antibody

Anti-SMC3 (A845; JM Peters lab; Sumara et al., 2002)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Samples were formaldehyde-crosslinked, lysed, sonicated, precipitated, and reverse crosslinked. Illumina sample libraries were prepared according to NEB protocol E6040

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

17366394

Reads aligned (%)

34.5

Duplicates removed (%)

2.0

Number of peaks

7683 (qval < 1E-05)

hg19

Number of total reads

17366394

Reads aligned (%)

34.3

Duplicates removed (%)

3.1

Number of peaks

7690 (qval < 1E-05)