Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5B

Cell type

Cell type Class
Breast
Cell type
C49R
NA
NA

Attributes by original data submitter

Sample

source_name
breast cancer cells
cell line
C49R
antibody
anti-KDM5B (Novus Biologicals, 22260002)
treatment_time
None

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
60037406
Reads aligned (%)
57.7
Duplicates removed (%)
40.7
Number of peaks
19997 (qval < 1E-05)

hg38

Number of total reads
60037406
Reads aligned (%)
60.1
Duplicates removed (%)
38.7
Number of peaks
20250 (qval < 1E-05)

Base call quality data from DBCLS SRA