Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
lacO_ovary
genotype/variation
lacO-GFP
age
adult stage 5-7 days old
tissue
ovary
chip antibody
H3K4me2 (Abcam, ab7766)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Drosophila DamID was carried out according to iDamIDseq based on a method from Gutierrez-Triana JA et al.2016 Libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm6

Number of total reads
37954503
Reads aligned (%)
85.0
Duplicates removed (%)
45.0
Number of peaks
8678 (qval < 1E-05)

dm3

Number of total reads
37954503
Reads aligned (%)
85.1
Duplicates removed (%)
44.6
Number of peaks
8925 (qval < 1E-05)

Base call quality data from DBCLS SRA