Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
ovaRNAi_ovary
genotype/variation
ova RNAi
age
adult stage 5-7 days old
tissue
ovary
chip antibody
H3K4me2 (Abcam, ab7766)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Drosophila DamID was carried out according to iDamIDseq based on a method from Gutierrez-Triana JA et al.2016 Libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm6

Number of total reads
28004200
Reads aligned (%)
98.5
Duplicates removed (%)
36.1
Number of peaks
8611 (qval < 1E-05)

dm3

Number of total reads
28004200
Reads aligned (%)
98.5
Duplicates removed (%)
35.6
Number of peaks
8808 (qval < 1E-05)

Base call quality data from DBCLS SRA