Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Lung
Cell type
NCI-H2171
Primary Tissue
Lung
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
Small Cell Lung Carcinoma
chip antibody
Brd4
antibody catalog number
Bethyl A301-985A
cell type
H2171
duration
6h
concentration
500nM
drug
JQ1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
44734688
Reads aligned (%)
96.3
Duplicates removed (%)
15.3
Number of peaks
2381 (qval < 1E-05)

hg19

Number of total reads
44734688
Reads aligned (%)
95.5
Duplicates removed (%)
16.7
Number of peaks
1369 (qval < 1E-05)

Base call quality data from DBCLS SRA