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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Pancreatic acinar cells
ATCC
MeSH
RIKEN BRC
SRX327163
GSM1193934: M1-IP; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pancreas
Cell type
Pancreatic acinar cells
NA
NA
Attributes by original data submitter
Sample
source_name
Pancreatic acinar cells
strain
C57BL6
genotype
Mist1-/-
antibody
Input
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Isolated nuclei from acinar cells were lysed and sonicated to yield sheared chromatin. Histone-DNA complexes were isolated with H3K4Me3 antibody antibody. Libraries were prepared according to established standard protocol at BGI (HK) .
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
12000000
Reads aligned (%)
99.1
Duplicates removed (%)
13.7
Number of peaks
304 (qval < 1E-05)
mm9
Number of total reads
12000000
Reads aligned (%)
98.8
Duplicates removed (%)
13.9
Number of peaks
328 (qval < 1E-05)
Base call quality data from
DBCLS SRA