Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic acinar cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pancreatic acinar cells
strain
C57BL6
genotype
Mist1-/-
antibody
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Isolated nuclei from acinar cells were lysed and sonicated to yield sheared chromatin. Histone-DNA complexes were isolated with H3K4Me3 antibody antibody. Libraries were prepared according to established standard protocol at BGI (HK) .

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
12000000
Reads aligned (%)
99.1
Duplicates removed (%)
13.7
Number of peaks
304 (qval < 1E-05)

mm9

Number of total reads
12000000
Reads aligned (%)
98.8
Duplicates removed (%)
13.9
Number of peaks
328 (qval < 1E-05)

Base call quality data from DBCLS SRA