Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM1A

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived pancreatic cells
NA
NA

Attributes by original data submitter

Sample

source_name
Early LSD1 inhibition PP2 replicate 1
cell type
differentiated hESCs
developmental stage
Late pancreatic progenitor cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Total RNA was extracted by RNARNeasy Mini Kit Libraries were prepared using the TruSeq® Stranded mRNA Library Prep Kit (RNA-seq) and the KAPA DNA Library Preparation Kits for Illumina® KAPA Kit (ChIP-seq)

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
46462096
Reads aligned (%)
91.1
Duplicates removed (%)
7.7
Number of peaks
45201 (qval < 1E-05)

hg38

Number of total reads
46462096
Reads aligned (%)
92.0
Duplicates removed (%)
7.2
Number of peaks
45226 (qval < 1E-05)

Base call quality data from DBCLS SRA