Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Embryo
Cell type
2-4h embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
2-4h gd7 embryo
genotype/variation
gd7
tissue
embryo
chip antibody
no antibody

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were constructed following He et al. (2011) ChIP-seq and ChIP-nexus was performed according to He et al. (2011) and He et al. (2015) with whole cell extract (WCE) derived from 100 mg embryos per ChIP

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
9777089
Reads aligned (%)
94.7
Duplicates removed (%)
9.8
Number of peaks
1660 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA