Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Embryo

Cell type

2-4h embryos

NA

NA

Sample

source_name

2-4h gd7 embryo

genotype/variation

gd7

tissue

embryo

chip antibody

no antibody

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-seq libraries were constructed following He et al. (2011) ChIP-seq and ChIP-nexus was performed according to He et al. (2011) and He et al. (2015) with whole cell extract (WCE) derived from 100 mg embryos per ChIP

Sequencing Platform

instrument_model

Illumina HiSeq 2000

dm6

Number of total reads

9777089

Reads aligned (%)

94.0

Duplicates removed (%)

14.2

Number of peaks

2274 (qval < 1E-05)

dm3

Number of total reads

9777089

Reads aligned (%)

94.7

Duplicates removed (%)

9.8

Number of peaks

1660 (qval < 1E-05)