Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pancreas
Cell type
Pancreas
MeSH Description
A nodular organ in the ABDOMEN that contains a mixture of ENDOCRINE GLANDS and EXOCRINE GLANDS. The small endocrine portion consists of the ISLETS OF LANGERHANS secreting a number of hormones into the blood stream. The large exocrine portion (EXOCRINE PANCREAS) is a compound acinar gland that secretes several digestive enzymes into the pancreatic ductal system that empties into the DUODENUM.

Attributes by original data submitter

Sample

source_name
pancreas
antibody
H3K27me3
cell type
Cell line established from K6A null murine pancreatic cancer
genotype
KDM6A-WT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's protocol and libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
32372848
Reads aligned (%)
87.1
Duplicates removed (%)
9.7
Number of peaks
171 (qval < 1E-05)

mm9

Number of total reads
32372848
Reads aligned (%)
87.1
Duplicates removed (%)
9.7
Number of peaks
160 (qval < 1E-05)

Base call quality data from DBCLS SRA