Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Cortex
NA
NA

Attributes by original data submitter

Sample

source_name
Cortex
cell type
Cortical cells
strain
C57BL/6
age
6 week old
chip antibody
none
gender
male

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIP-seq, chromatin of whole cortex from two 6-week-old C57BL/6 mice were used. For TAB-seq and WGBS, the genomic DNA was isolated from the nuclei of the cortical excitatory neurons. For ATAC-seq, the chromatin was isolated from the nuclei of the cortical excitatory neurons. Libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
21237153
Reads aligned (%)
98.1
Duplicates removed (%)
24.9
Number of peaks
315 (qval < 1E-05)

mm9

Number of total reads
21237153
Reads aligned (%)
97.9
Duplicates removed (%)
25.0
Number of peaks
249 (qval < 1E-05)

Base call quality data from DBCLS SRA