Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
RMG-I
Primary Tissue
Ovary
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Input, prepared using 5% of original sample, no treatment
cell line
RMG-1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
71871227
Reads aligned (%)
98.4
Duplicates removed (%)
8.5
Number of peaks
1826 (qval < 1E-05)

hg19

Number of total reads
71871227
Reads aligned (%)
97.8
Duplicates removed (%)
9.8
Number of peaks
1238 (qval < 1E-05)

Base call quality data from DBCLS SRA