Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID1A

Cell type

Cell type Class
Gonad
Cell type
RMG-I
Primary Tissue
Ovary
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
ARID1A was profiled in parental RMG-1
cell line
RMG-1
chip antibody
Abcam ab182560

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
93365182
Reads aligned (%)
86.8
Duplicates removed (%)
8.4
Number of peaks
1126 (qval < 1E-05)

hg38

Number of total reads
93365182
Reads aligned (%)
88.5
Duplicates removed (%)
7.1
Number of peaks
1523 (qval < 1E-05)

Base call quality data from DBCLS SRA