Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID1A

Cell type

Cell type Class
Gonad
Cell type
RMG-I
Primary Tissue
Ovary
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
ARID1A was profiled in parental RMG-1
cell line
RMG-1
chip antibody
Abcam ab97995

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
55576364
Reads aligned (%)
80.3
Duplicates removed (%)
14.5
Number of peaks
25298 (qval < 1E-05)

hg38

Number of total reads
55576364
Reads aligned (%)
82.2
Duplicates removed (%)
13.2
Number of peaks
25810 (qval < 1E-05)

Base call quality data from DBCLS SRA