SRX323563
GSM1187227: Ascl1 NPC+Ascl1 input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Induced neural progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
neural progenitor treated with Ascl1
cell type
neural progenitor treated with Ascl1
strain
C57BL/6
antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The isolated DNA was RNase treated and purified using Qiagen columns. For sequencing libraries we followed Illumina’s protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12940951
Reads aligned (%)
95.7
Duplicates removed (%)
10.1
Number of peaks
455 (qval < 1E-05)

mm9

Number of total reads
12940951
Reads aligned (%)
95.5
Duplicates removed (%)
10.3
Number of peaks
504 (qval < 1E-05)

Base call quality data from DBCLS SRA