SRX3235154
6mA-IP rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Peripheral blood mononuclear cells
NA
NA

Attributes by original data submitter

Sample

isolate
from an anonymous healthy Chinese adult male (HX1) with normal karyotype
age
30
biomaterial_provider
6mA-IP-seq biological replicate 2
sex
male
tissue
peripheral blood mononuclear cell

Sequenced DNA Library

library_name
6mA-IP_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27085413
Reads aligned (%)
79.1
Duplicates removed (%)
45.7
Number of peaks
4338 (qval < 1E-05)

hg19

Number of total reads
27085413
Reads aligned (%)
76.3
Duplicates removed (%)
46.1
Number of peaks
4135 (qval < 1E-05)

Base call quality data from DBCLS SRA