Antigen

Antigen Class

TFs and others

Antigen

ZNF331

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

source_name

HepG2 cells

cell line

HepG2

chip antibody

FLAG-ZNF331

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cross-linked chromatin was immunoprecipitated with an antibody. The Protein:DNA crosslinks were then reversed and the DNA fragments were recovered and sequenced. Please see protocol notes below and go to http://hudsonalpha.org/myers-lab/protocols for the most current version of the protocol. Illumina Single End for ChIP-seq

Sequencing Platform

instrument_model

NextSeq 500

hg19

Number of total reads

107972415

Reads aligned (%)

80.7

Duplicates removed (%)

8.9

Number of peaks

53099 (qval < 1E-05)

hg38

Number of total reads

107972415

Reads aligned (%)

82.1

Duplicates removed (%)

7.8

Number of peaks

53054 (qval < 1E-05)