Antigen

Antigen Class

TFs and others

Antigen

ZC3H4

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

source_name

HepG2 cells

cell line

HepG2

chip antibody

FLAG-ZC3H4

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cross-linked chromatin was immunoprecipitated with an antibody. The Protein:DNA crosslinks were then reversed and the DNA fragments were recovered and sequenced. Please see protocol notes below and go to http://hudsonalpha.org/myers-lab/protocols for the most current version of the protocol. Illumina Single End for ChIP-seq

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

73925582

Reads aligned (%)

94.4

Duplicates removed (%)

5.6

Number of peaks

9185 (qval < 1E-05)

hg19

Number of total reads

73925582

Reads aligned (%)

93.9

Duplicates removed (%)

6.5

Number of peaks

8728 (qval < 1E-05)