Curated Sample Data


Genome
mm9
Antigen Class
Histone
Antigen
H3K27me3
Cell type Class
Embryo
Cell type
E7.0 embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
K27me3 microChIP
strain
ICR
developmental stage
7.0 dpc
tissue
embryo
chip antibody
H3K27me3 (merck millipore, cat. 07-449, lot 2275589)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA acquired from ChIP assay (H3K27me3, merck millipore, catlog number: 07-449, lot number: 2275589) of embryo samples were separated and extracted by microChIP. Libraries of genomic DNA were construted by using NEBNext Ultra DNA Library Prep Kit for Illumina (NEB #7370L).

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
37537649
Reads aligned (%)
98.6
Duplicates removed (%)
47.3
Number of peaks
545 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA