Curated Sample Data


Genome
mm9
Antigen Class
Input control
Antigen
Input control
Cell type Class
Embryo
Cell type
E7.0 embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
genomic input sequencing
strain
ICR
developmental stage
7.0 dpc
tissue
embryo

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA acquired from ChIP assay (H3K27me3, merck millipore, catlog number: 07-449, lot number: 2275589) of embryo samples were separated and extracted by microChIP. Libraries of genomic DNA were construted by using NEBNext Ultra DNA Library Prep Kit for Illumina (NEB #7370L).

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
31988683
Reads aligned (%)
98.7
Duplicates removed (%)
12.3
Number of peaks
231 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA