Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Embryo
Cell type
12-14h embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
12-14 hour old embryos svb::GFP
genotype
svb::GFP
age
12-14 hour embryo
tissue
embryo
chip antibody
input

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin extract protocol was as described in Nègre N, Brown CD, Ma L, Bristow CA et al. A cis-regulatory map of the Drosophila genome. Nature 2011 Mar 24;471(7339):527-31. PMID: 21430782 Nextera libraries were made as described in Nègre N, Brown CD, Ma L, Bristow CA et al. A cis-regulatory map of the Drosophila genome. Nature 2011 Mar 24;471(7339):527-31. PMID: 21430782

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
18523111
Reads aligned (%)
91.8
Duplicates removed (%)
16.3
Number of peaks
4737 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA