Antigen

Antigen Class

TFs and others

Antigen

GFP

Cell type

Cell type Class

Embryo

Cell type

12-14h embryos

NA

NA

Sample

source_name

12-14 hour old embryos svb::GFP

genotype

svb::GFP

age

12-14 hour embryo

tissue

embryo

chip antibody

anti-GFP

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Chromatin extract protocol was as described in Nègre N, Brown CD, Ma L, Bristow CA et al. A cis-regulatory map of the Drosophila genome. Nature 2011 Mar 24;471(7339):527-31. PMID: 21430782 Nextera libraries were made as described in Nègre N, Brown CD, Ma L, Bristow CA et al. A cis-regulatory map of the Drosophila genome. Nature 2011 Mar 24;471(7339):527-31. PMID: 21430782

Sequencing Platform

instrument_model

Illumina Genome Analyzer

dm6

Number of total reads

16956734

Reads aligned (%)

91.3

Duplicates removed (%)

35.4

Number of peaks

5795 (qval < 1E-05)

dm3

Number of total reads

16956734

Reads aligned (%)

91.6

Duplicates removed (%)

33.7

Number of peaks

4977 (qval < 1E-05)