ChIP-Atlas: SRX319763

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Breast
Cell type: Mammary glands
NA: NA

Attributes by original data submitter

Sample

source_name: Mammary gland tissues, p6, input
strain/background: 129SV::FVB/N::C57BL/6
genotype/variation: wild type
tissue: mammary gland
developmental stage: day 6 of pregnancy
chip antibody: none

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: The ChIP DNA fragments were blunt-ended and ligated to the Illumina Indexed DNA adaptors using NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina (# E6240, New England BioLabs, Ipswich, MA), and sequenced using the Illumina HiSeq 2000.

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 47915663
Reads aligned (%): 98.3
Duplicates removed (%): 88.7
Number of peaks: 208 (qval < 1E-05)

mm9

Number of total reads: 47915663
Reads aligned (%): 98.1
Duplicates removed (%): 88.8
Number of peaks: 202 (qval < 1E-05)

Base call quality data from DBCLS SRA