SRX3176025
GSM2779224: E14 4h washout H3K27me2 ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
129/Ola
chip antibody
H3K27me2 (Cell Signaling, Rabbit mAb, D18C8)
genotype
WT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra II protocol (NEB, E7645S)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40528922
Reads aligned (%)
91.5
Duplicates removed (%)
7.8
Number of peaks
8061 (qval < 1E-05)

mm9

Number of total reads
40528922
Reads aligned (%)
91.4
Duplicates removed (%)
7.8
Number of peaks
8132 (qval < 1E-05)

Base call quality data from DBCLS SRA