ChIP-Atlas: SRX3175999

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Pluripotent stem cell
Cell type: ES cells
NA: NA

Attributes by original data submitter

Sample

source_name: Embryonic stem cells
strain: C57BL/6
chip antibody: none
genotype: Ezh1/Ezh2 dKO

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: NEBNext Ultra protocol (NEB, E7370S)

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 19756282
Reads aligned (%): 95.5
Duplicates removed (%): 22.4
Number of peaks: 613 (qval < 1E-05)

mm9

Number of total reads: 19756282
Reads aligned (%): 95.0
Duplicates removed (%): 22.4
Number of peaks: 667 (qval < 1E-05)

Base call quality data from DBCLS SRA