Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Clamp

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Kc167 cells, dsCLAMP, clamp-abcam ChIP
cell line
Kc167
treatment
dsCLAMP
chip antibody
clamp-abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed as described previously (Matzat et al., 2012). ChIP-seq library was prepared as described previously (Matzat et al., 2012).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm3

Number of total reads
20203124
Reads aligned (%)
79.2
Duplicates removed (%)
28.3
Number of peaks
2554 (qval < 1E-05)

dm6

Number of total reads
20203124
Reads aligned (%)
77.6
Duplicates removed (%)
31.7
Number of peaks
3824 (qval < 1E-05)

Base call quality data from DBCLS SRA