Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cp190

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Kc167 cells, mock, cp190 ChIP
cell line
Kc167
treatment
mock
chip antibody
cp190

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed as described previously (Matzat et al., 2012). ChIP-seq library was prepared as described previously (Matzat et al., 2012).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm3

Number of total reads
12433944
Reads aligned (%)
88.1
Duplicates removed (%)
23.9
Number of peaks
8953 (qval < 1E-05)

dm6

Number of total reads
12433944
Reads aligned (%)
88.0
Duplicates removed (%)
24.8
Number of peaks
8663 (qval < 1E-05)

Base call quality data from DBCLS SRA