Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Clamp

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Kc167 cells, mock, clamp ChIP
cell line
Kc167
treatment
mock
chip antibody
clamp

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed as described previously (Matzat et al., 2012). ChIP-seq library was prepared as described previously (Matzat et al., 2012).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm3

Number of total reads
6818737
Reads aligned (%)
77.6
Duplicates removed (%)
41.6
Number of peaks
5008 (qval < 1E-05)

dm6

Number of total reads
6818737
Reads aligned (%)
77.2
Duplicates removed (%)
44.3
Number of peaks
4732 (qval < 1E-05)

Base call quality data from DBCLS SRA