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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: Myeloid progenitors
ATCC
MeSH
RIKEN BRC
SRX3159189
GSM2771546: MP H3K27ac; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
Myeloid progenitors
NA
NA
Attributes by original data submitter
Sample
source_name
Lin- bone marrow
strain
C57BL/6
cell type
untransformed myeloid progenitors (MP)
viral transduction
None
days in culture
7
culture condition
Stem cell (10ng/mL IL3, 10ng/mL IL6 100mg/mL SCF)
chip antibody
H3K27ac (Abcam ab4729)
tissue
Lin- bone marrow
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were collected from sonicated cells. Chromatin fragments were isolated with antibody, RNase treated and column purified. Libraries were generated using Illumina ChIP-seq Library Preparation Kit
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
43006757
Reads aligned (%)
87.7
Duplicates removed (%)
22.2
Number of peaks
27779 (qval < 1E-05)
mm9
Number of total reads
43006757
Reads aligned (%)
87.6
Duplicates removed (%)
22.3
Number of peaks
27818 (qval < 1E-05)
Base call quality data from
DBCLS SRA