Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
IMR-5
NA
NA

Attributes by original data submitter

Sample

source_name
IMR-5
cell line
IMR-5
antibody
CTCF (abcam, ab70303)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
68800202
Reads aligned (%)
76.9
Duplicates removed (%)
18.7
Number of peaks
33258 (qval < 1E-05)

hg38

Number of total reads
68800202
Reads aligned (%)
78.7
Duplicates removed (%)
17.2
Number of peaks
33587 (qval < 1E-05)

Base call quality data from DBCLS SRA