Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
P19
Tissue
Embryo
Disease
Teratocarcinoma; Embryonal Carcinoma

Attributes by original data submitter

Sample

source_name
mouse embryonic carcinoma cells
cell line
p19 cells
stable integrate
pBI-EGFP-FLAG-mCtcfl and pTA-N
treatment
Cells were kept in DMEM supplemented with 2 μg/ml Doxycycline, for induction the cells were grown for 48h in DMEM without Doxycycline
antibody
NA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was isolated and sheared using BioRuptor (Diagenode). ChIPs were performed using a One-Day Protocol as described by Nelson et al. (2006 / Nature Protocols / DOI: 10.1038/nprot.2006.27 Sequencing libraries were prepared from 10 ng of immunoprecipitated DNA with the Illumina ChIPSeq DNA Sample Prep Kit according to Illuminas’ instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
19992276
Reads aligned (%)
87.4
Duplicates removed (%)
28.9
Number of peaks
349 (qval < 1E-05)

mm9

Number of total reads
19992276
Reads aligned (%)
87.2
Duplicates removed (%)
29.0
Number of peaks
370 (qval < 1E-05)

Base call quality data from DBCLS SRA