SRX312230
GSM1171651: IgG ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ESC E14
cell line background
E14
cell type
embryonic stem cells (ESCs)
genotype/variation
parental wild type
chip antibody
anti-IgG
chip antibody vendor
santa cruz biotechnology

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was extracted from crosslinked cells using SDS lysis buffer. Chromatin was immunoprecipiate with specific beads and DNA was eluted and de-crosslinked.

Sequencing Platform

instrument_model
Illumina HiScanSQ

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
94891327
Reads aligned (%)
96.7
Duplicates removed (%)
33.4
Number of peaks
707 (qval < 1E-05)

mm9

Number of total reads
94891327
Reads aligned (%)
96.5
Duplicates removed (%)
33.4
Number of peaks
795 (qval < 1E-05)

Base call quality data from DBCLS SRA