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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: RCH-ACV
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3114677
GSM2750989: shLUC-H3K9me3 TTAGGC; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Blood
Cell type
RCH-ACV
Primary Tissue
Blood
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
RCH-ACV E2A-PBX1+ human cell line
cell type
E2A-PBX1+ B-ALL cell line
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Trizol for total RNA Manufacture prototol for RNAseq library; customized protocol for ChIP-seq (Wong et al., 2015, Cancer Cell)
Sequencing Platform
instrument_model
Illumina HiSeq 3000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
104537523
Reads aligned (%)
97.4
Duplicates removed (%)
10.7
Number of peaks
181805 (qval < 1E-05)
hg19
Number of total reads
104537523
Reads aligned (%)
96.5
Duplicates removed (%)
11.3
Number of peaks
181361 (qval < 1E-05)
Base call quality data from
DBCLS SRA