Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
RCH-ACV
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
RCH-ACV E2A-PBX1+ human cell line
cell type
E2A-PBX1+ B-ALL cell line

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Trizol for total RNA Manufacture prototol for RNAseq library; customized protocol for ChIP-seq (Wong et al., 2015, Cancer Cell)

Sequencing Platform

instrument_model
Illumina HiSeq 3000

hg38

Number of total reads
71630156
Reads aligned (%)
97.6
Duplicates removed (%)
8.9
Number of peaks
163033 (qval < 1E-05)

hg19

Number of total reads
71630156
Reads aligned (%)
96.9
Duplicates removed (%)
9.5
Number of peaks
162167 (qval < 1E-05)

Base call quality data from DBCLS SRA