Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7_ER_ER_HC11
cell line
MCF7
cell type
mammary epithelial cells
experiment number
SLX-12998
chip antibody
ER (sc-543, Santa Cruz)
control antibody
ER (sc-543, Santa Cruz)
condition
none
spike-in cell line
HC11
spike-in organism
mus musculus
replicate
3

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
37049289
Reads aligned (%)
66.8
Duplicates removed (%)
23.8
Number of peaks
15607 (qval < 1E-05)

hg38

Number of total reads
37049289
Reads aligned (%)
68.3
Duplicates removed (%)
22.6
Number of peaks
15627 (qval < 1E-05)

Base call quality data from DBCLS SRA