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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: L4
ATCC
MeSH
RIKEN BRC
SRX3104606
GSM2747080: XRN2 ChIP rep2; Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Larvae
Cell type
L4
NA
NA
Attributes by original data submitter
Sample
source_name
Whole worms
strain/genotype
xrn-2::gfp (HW1023)
developmental stage
L4
replicate
2
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinked, sonicated and purified using (A-11122, Thermo Fisher Scientific) Library was prepared using the NEBNext Ultra DNA Library Prep Kit for Illumina (NEB).
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
21726070
Reads aligned (%)
69.2
Duplicates removed (%)
57.0
Number of peaks
3776 (qval < 1E-05)
ce10
Number of total reads
21726070
Reads aligned (%)
69.2
Duplicates removed (%)
57.0
Number of peaks
3780 (qval < 1E-05)
Base call quality data from
DBCLS SRA