SRX3103112
GSM2746703: L-C-B, ChIP-SIRT6; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SIRT6

Cell type

Cell type Class
Epidermis
Cell type
L-C-B
NA
NA

Attributes by original data submitter

Sample

source_name
SKMel-239 L-C-B
disease state
BRAF metastatic melanoma
cell line
L-C-B
treatment
untreated
chip antibody
SIRT6 (Abcam, ab62739)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
21966166
Reads aligned (%)
73.9
Duplicates removed (%)
71.4
Number of peaks
4308 (qval < 1E-05)

hg38

Number of total reads
21966166
Reads aligned (%)
74.2
Duplicates removed (%)
70.8
Number of peaks
4354 (qval < 1E-05)

Base call quality data from DBCLS SRA