Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
fetal forebrain E14.5
strain
C57BL/6
time point
no treatment
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
After dissection, cells were cross-linked by 5 min of 1% formaldehyde treatment at 37˚C. The chromatin was sonicated using Bioruptor UCD-250. After IP, stringent washes, reverse cross-linked and proteinase K treatment, DNA was extracted using PCR purification kit (QIAGEN). ChIP-seq library were prepared with ChIP-seq sample prep kit (illumina) for the paired end read Illumina HiSeq 2000 platform.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
298516364
Reads aligned (%)
92.6
Duplicates removed (%)
10.5
Number of peaks
1901 (qval < 1E-05)

mm9

Number of total reads
298516364
Reads aligned (%)
92.4
Duplicates removed (%)
10.9
Number of peaks
1909 (qval < 1E-05)

Base call quality data from DBCLS SRA