Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCA2

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2_BRM CHIP-seq in shNS
cell line
HepG2
cell type
liver cancer cell line
tranduced with
shNS
chip antibody
BRM (D9E8B) XP® Rabbit mAb
chip antibody vendor
Cell Signaling

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
33896415
Reads aligned (%)
90.7
Duplicates removed (%)
2.2
Number of peaks
3407 (qval < 1E-05)

hg38

Number of total reads
33896415
Reads aligned (%)
92.1
Duplicates removed (%)
2.1
Number of peaks
3522 (qval < 1E-05)

Base call quality data from DBCLS SRA