Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K122ac

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
DMSO_H3K122ac, MDA-MB-231
cell line
MDA-MB-231 breast cancer cells
chip antibody
Histone H3 Acetyl K122 (abcam, ab33309, lot GR284790-3)
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cross-linked chromatin was sheared by sonication and immunoprecipitated with antibodies. DNA was purified by phenol/chloroform extraction and ethanol precipitation. NuGEN Ovation Ultralow Library Prep System kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
64214253
Reads aligned (%)
98.8
Duplicates removed (%)
11.5
Number of peaks
58249 (qval < 1E-05)

hg19

Number of total reads
64214253
Reads aligned (%)
98.5
Duplicates removed (%)
11.9
Number of peaks
58139 (qval < 1E-05)

Base call quality data from DBCLS SRA