Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PRDM1

Cell type

Cell type Class
Blood
Cell type
U-266
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
Mutiple Myeloma cell line
cell type
Plasma cell lymphoma
chip-antibody
PRDM1 (C14A4) rabbit mAb (Cell Signaling Tecnology)
cell line
U266

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Purified nuclei were sonicated and PRDM1- or unbound DNA complexes were isolated utilizing PRDM1 antibody The library was prepared using the Illumina TruSeq Library preparation Kit according to manufacturer protocol (Illumina, Inc.)

Sequencing Platform

instrument_model
Illumina HiScanSQ

hg19

Number of total reads
5958923
Reads aligned (%)
168.4
Duplicates removed (%)
0.3
Number of peaks
726 (qval < 1E-05)

hg38

Number of total reads
5958923
Reads aligned (%)
170.5
Duplicates removed (%)
0.2
Number of peaks
780 (qval < 1E-05)

Base call quality data from DBCLS SRA