Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
GM18526
Tissue
blood
Lineage
mesoderm
Description
lymphoblastoid, International HapMap Project, Han Chinese in Beijing, China, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
lymphoblastoid cell line
biomaterial_provider
GM18522
cell line
GM18522
cell type
lymphoblastoid cell line
population
YRI
ethnicity
Yoruba
country of origin
Nigeria
chip antibody
H3K4me3 (Abcam ab8580)
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
42253530
Reads aligned (%)
97.9
Duplicates removed (%)
35.2
Number of peaks
31258 (qval < 1E-05)

hg19

Number of total reads
42253530
Reads aligned (%)
97.1
Duplicates removed (%)
36.3
Number of peaks
32534 (qval < 1E-05)

Base call quality data from DBCLS SRA