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Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Ice1
wikigenes
PDBj
CellType: S2
ATCC
MeSH
RIKEN BRC
SRX306196
GSM1162766: fly Ice1 shIce1 2 ChIP 2; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ice1
Cell type
Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage
Attributes by original data submitter
Sample
source_name
S2 cell culture
cell type
S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab
antibody
anti-Ice1 (CG13550, aa 1-192; Smith et al., Mol Cell. 2011 Dec 23;44(6):954-65)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP libraries were prepared with the TruSeq DNA Sample Kit (Illumina #FC-121-2001) according to Illumina's instructions.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
29203399
Reads aligned (%)
84.3
Duplicates removed (%)
10.9
Number of peaks
4690 (qval < 1E-05)
dm6
Number of total reads
29203399
Reads aligned (%)
81.7
Duplicates removed (%)
13.4
Number of peaks
5394 (qval < 1E-05)
Base call quality data from
DBCLS SRA