Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ice1

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 cell culture
cell type
S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab
antibody
anti-Ice1 (CG13550, aa 1-192; Smith et al., Mol Cell. 2011 Dec 23;44(6):954-65)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP libraries were prepared with the TruSeq DNA Sample Kit (Illumina #FC-121-2001) according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
34066666
Reads aligned (%)
82.2
Duplicates removed (%)
11.9
Number of peaks
5060 (qval < 1E-05)

dm6

Number of total reads
34066666
Reads aligned (%)
79.5
Duplicates removed (%)
14.5
Number of peaks
5660 (qval < 1E-05)

Base call quality data from DBCLS SRA