SRX3058058
GSM2730402: UNC-55 ChIPSeq; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Larvae
Cell type
L2
NA
NA

Attributes by original data submitter

Sample

source_name
whole worms
strain
GSH100
developmental stage
L2
tissue
whole worms
antibody
GFP beads(ChromoTek, Gat-20)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNAs were isolated with antibody from whole worm lystaes.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
17819829
Reads aligned (%)
73.0
Duplicates removed (%)
48.7
Number of peaks
3135 (qval < 1E-05)

ce10

Number of total reads
17819829
Reads aligned (%)
73.0
Duplicates removed (%)
48.7
Number of peaks
3135 (qval < 1E-05)

Base call quality data from DBCLS SRA