Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EPAS1

Cell type

Cell type Class
Kidney
Cell type
Renal cell carcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
ccRCC cell line
transcription factor
HIF2A
chip antibody
HIF2A (NB100-122, Novus Bio, lot# BY-6)
source
patient tumor derived cell line

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
48001833
Reads aligned (%)
97.7
Duplicates removed (%)
24.2
Number of peaks
3845 (qval < 1E-05)

hg19

Number of total reads
48001833
Reads aligned (%)
97.0
Duplicates removed (%)
25.5
Number of peaks
3335 (qval < 1E-05)

Base call quality data from DBCLS SRA