Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
A498
NA
NA

Attributes by original data submitter

Sample

source_name
ccRCC cell line
histone
Input
chip antibody
none
source
A-498 (ATCC HTB-44)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
33494643
Reads aligned (%)
89.3
Duplicates removed (%)
20.9
Number of peaks
4453 (qval < 1E-05)

hg19

Number of total reads
33494643
Reads aligned (%)
88.5
Duplicates removed (%)
21.6
Number of peaks
4311 (qval < 1E-05)

Base call quality data from DBCLS SRA