SRX304980
GSM1161555: input DNA 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells
cell type
mouse embryonic stem cells
genotype
wildtype
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31368942
Reads aligned (%)
91.1
Duplicates removed (%)
8.5
Number of peaks
744 (qval < 1E-05)

mm9

Number of total reads
31368942
Reads aligned (%)
90.9
Duplicates removed (%)
8.6
Number of peaks
817 (qval < 1E-05)

Base call quality data from DBCLS SRA