Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Neural
Cell type
Cerebellar granular neuron progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
cerebellum, granular neuron progenitors
antibody
H3K79me2
agent
CGNP DMSO
strain
NMRI
developmental stage
P7, DIV1
genotype
Wildtype

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Roidl et al, Stem Cells. 2016 Jan;34(1):233-45. doi: 10.1002/stem.2187. 1 - NEBNext® Ultra DNA Library Prep Kit for Illumina® Minus Size Selection (E7370S/L)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
28719222
Reads aligned (%)
98.2
Duplicates removed (%)
4.7
Number of peaks
4858 (qval < 1E-05)

mm9

Number of total reads
28719222
Reads aligned (%)
98.1
Duplicates removed (%)
5.0
Number of peaks
4828 (qval < 1E-05)

Base call quality data from DBCLS SRA