Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Cerebellar granular neuron progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
cerebellum, granular neuron progenitors
antibody
none, Input
agent
CGNP DMSO
strain
NMRI
developmental stage
P7, DIV1
genotype
Wildtype

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Roidl et al, Stem Cells. 2016 Jan;34(1):233-45. doi: 10.1002/stem.2187. 1 - NEBNext® Ultra DNA Library Prep Kit for Illumina® Minus Size Selection (E7370S/L)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
24633799
Reads aligned (%)
97.8
Duplicates removed (%)
7.2
Number of peaks
183 (qval < 1E-05)

mm9

Number of total reads
24633799
Reads aligned (%)
97.6
Duplicates removed (%)
7.9
Number of peaks
178 (qval < 1E-05)

Base call quality data from DBCLS SRA